Vita - miRNA-targeted virus

Statistic of ViTa

	
Total numbers of virus :   



Numbers of different genome types of virus infecting human: 

	  
    -dsDNA virus : 178	
    -ssDNA virus : 18	
    -dsRNA virus : 16	
    -negative ssRNA virus :  55	
    -positive ssRNA virus :  170	
    -Retro-transcripting virus : 8

Liver virus

Numbers of miRNAs v.s Liver virus (wildtype)
   Predicted by miRanda

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Virus
Numbers of miRNAs
Total target sites HAV

1778 HBV

1075 HCV

4725 HDV

707 HEV

3298 HGV

4939

   Predicted by TargetScan

Virus
Numbers of miRNAs
Total target sites HAV
76
99 HBV
0
0 HCV
115
164 HDV
0
0 HEV
60
96 HGV
134
208

Common miRNAs target to Liver virus
Statistic of common miRNAs between virus     **Click numbers of miRNA to browse
Liver virus Numbers of miRNAs Liver virus Numbers of miRNAs
HAV,HBV,HCV       3 HAV,HBV,HCV,HDV,HEV,HGV       232
HAV,HBV,HCV,HDV,HGV       2 HAV,HBV,HCV,HEV       1
HAV,HBV,HCV,HEV,HGV       69 HAV,HBV,HCV,HGV       2
HAV,HCV       1 HAV,HCV,HDV,HEV,HGV       7
HAV,HCV,HEV       1 HAV,HCV,HEV,HGV       7
HBV       1 HBV,HCV       1
HCV       1

HAV, HBV and HCV, HDV and HEV, HGV.     ** Click circles to browse

232 miRNAs

HAV, HBV, HCV and HEV, HGV.

69 miRNAs
HBV, HCV, HDV, HEV, HGV.

0 miRNAs

HAV, HBV and HCV, HGV.

2 miRNAs
HAV, HBV, HDV.

0 miRNAs

Human-related virus

Numbers of species in the same family.

Family Parvo- Reo- Picorna- Herpes- Flavi- Pox- Bunya- Toga-
Total 10 2 2 2 2 2 4 4
Targeted 1 1 0 1 0 0 3
Family Corona- Polyoma- Calici- Orthomyxo- Rhabdo- Adeno- Arena- Paramyxo-
Total 4 8 21 2 21 6 9 3
Targeted 3 5 8 1 17 3 7 2
Family Hepadna- unassigned Hepe- Astro- Retro- Papilloma- Filo- Arteri-
Total 10 2 31 83 15 146 39 42
Targeted 9 1 2 80 5 37 28 29

Average target sites of family.

Average number of different miRNAs target the same transcript .

mfe
score <=-10 <=-15 <=-20 <=-25
>= 120   260.93   188.47   64.5   9.66
>= 140   156.93   113.23   38.77   6.64
>= 160   33.75   29.52   12.88   3.3
>= 180   2.03   2.03   1.93   1.5
>= 200   1   1   1   1

Average number of transcripts targeted by each miRNAs .

mfe
score <=-10 <=-15 <=-20 <=-25
>= 120   229.13   188.96   83.65   19.13
>= 140   170.41   132.67   56.2   14.06
>= 160   50.65   45.22   22.38   8.41
>= 180   5.81   5.81   5.54   3.91
>= 200   3   3   3   3

Average target sites of each miRNAs .

mfe
score <=-10 <=-15 <=-20 <=-25
>= 120   33754.86   11693.66   1755.98   182.86
>= 140   6174.34   3524.49   819.14   117.03
>= 160   620.39   537.11   213.28   61.25
>= 180   44.49   44.49   37.68   28.59
>= 200   6.33   6.33   6.33   6.33

Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University,Hsinchu, Taiwan
Contact with: bryan@mail.NCTU.edu.tw