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Statistic of ViTa

	
Total numbers of virus :   



Numbers of different genome types of virus infecting human:
	  
    -dsDNA virus : 178
    -ssDNA virus : 18
    -dsRNA virus : 16
    -negative ssRNA virus : 55
    -positive ssRNA virus : 170
    -Retro-transcripting virus : 8
Liver virus
Numbers of miRNAs v.s Liver virus (wildtype)
   Predicted by miRanda
Virus
Numbers of miRNAs
Total target sites
HAV
52
1778
HBV
47
1075
HCV
86
4725
HDV
22
707
HEV
66
3298
HGV
86
4939
   Predicted by TargetScan
Virus
Numbers of miRNAs
Total target sites
HAV
76
99
HBV
0
0
HCV
115
164
HDV
0
0
HEV
60
96
HGV
134
208

Common miRNAs target to Liver virus
Statistic of common miRNAs between virus     **Click numbers of miRNA to browse
Liver virusNumbers of miRNAsLiver virusNumbers of miRNAs
HAV,HBV,HCV      3HAV,HBV,HCV,HDV,HEV,HGV      232
HAV,HBV,HCV,HDV,HGV      2HAV,HBV,HCV,HEV      1
HAV,HBV,HCV,HEV,HGV      69HAV,HBV,HCV,HGV      2
HAV,HCV      1HAV,HCV,HDV,HEV,HGV      7
HAV,HCV,HEV      1HAV,HCV,HEV,HGV      7
HBV      1HBV,HCV      1
HCV      1

HAV, HBV and HCV, HDV and HEV, HGV.     ** Click circles to browse
232 miRNAs

HAV, HBV, HCV and HEV, HGV.
69 miRNAs
HBV, HCV, HDV, HEV, HGV.
0 miRNAs
HAV, HBV and HCV, HGV.
2 miRNAs
HAV, HBV, HDV.
0 miRNAs



Human-related virus

Numbers of species in the same family.

FamilyParvo-Reo-Picorna-Herpes-Flavi-Pox-Bunya-Toga-
Total102222244
Targeted1101003
FamilyCorona-Polyoma-Calici-Orthomyxo-Rhabdo-Adeno-Arena-Paramyxo-
Total4821221693
Targeted358117372
FamilyHepadna-unassignedHepe-Astro-Retro-Papilloma-Filo-Arteri-
Total1023183151463942
Targeted912805372829

Average target sites of family.

Average number of different miRNAs target the same transcript .
mfe
score
<=-10<=-15<=-20<=-25
>= 120  260.93  188.47  64.5  9.66
>= 140  156.93  113.23  38.77  6.64
>= 160  33.75  29.52  12.88  3.3
>= 180  2.03  2.03  1.93  1.5
>= 200  1  1  1  1
Average number of transcripts targeted by each miRNAs .
mfe
score
<=-10<=-15<=-20<=-25
>= 120  229.13  188.96  83.65  19.13
>= 140  170.41  132.67  56.2  14.06
>= 160  50.65  45.22  22.38  8.41
>= 180  5.81  5.81  5.54  3.91
>= 200  3  3  3  3
Average target sites of each miRNAs .
mfe
score
<=-10<=-15<=-20<=-25
>= 120  33754.86  11693.66  1755.98  182.86
>= 140  6174.34  3524.49  819.14  117.03
>= 160  620.39  537.11  213.28  61.25
>= 180  44.49  44.49  37.68  28.59
>= 200  6.33  6.33  6.33  6.33

Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University,Hsinchu, Taiwan
Contact with: bryan@mail.NCTU.edu.tw