Browse predicted human virus miRNA targets Browse predited mouse virus miRNA targets Browse predited rat virus miRNA targets Browse predited chicken virus miRNA targets
virusRotavirus subgroup 1
accD00325        get sequence
locusRO1HVP6 1356 bp RNA linear VRL 29-MAY-2002
descriptionRotavirus subgroup 1 gene for VP6, complete cds.
versionD00325.1 GI:222515
organismRotavirus subgroup 1
 
feature
  * location : D00325
  * mol_type : 1..1356
  * strain : Rotavirus subgroup 1
  * db_xref : genomic RNA
      
similarity between familyBrowse similarity between other speices in the same family.
infected tissueintestine



Targeted by miRanda

(show 100 here)
Total 46 records predicted by miRanda!    (click miRNAs to view detailed info)

miRNAs in the same tissue showed in boldface
hsa-let-7c hsa-let-7i hsa-miR-103 hsa-miR-107 hsa-miR-122a
hsa-miR-127 hsa-miR-129 hsa-miR-138 hsa-miR-145 hsa-miR-147
hsa-miR-183 hsa-miR-184 hsa-miR-189 hsa-miR-199a hsa-miR-199a*
hsa-miR-206 hsa-miR-220 hsa-miR-222 hsa-miR-302b* hsa-miR-302c*
hsa-miR-31 hsa-miR-329 hsa-miR-337 hsa-miR-342 hsa-miR-34a
hsa-miR-34c hsa-miR-370 hsa-miR-383 hsa-miR-429 hsa-miR-432
hsa-miR-449 hsa-miR-484 hsa-miR-486 hsa-miR-487b hsa-miR-488
hsa-miR-490 hsa-miR-510 hsa-miR-511 hsa-miR-512-3p hsa-miR-515-3p
hsa-miR-516-5p hsa-miR-518c* hsa-miR-520a* hsa-miR-523 hsa-miR-524
hsa-miR-7
Targeted by TargetScanBrowse



view map
cds
positiongeneprotein_idnote
XXBAA00237.1X
reference
1 (bases 1 to 1356)
Author : Gorziglia,M., Hoshino,Y., Nishikawa,K., Maloy,W.L., Jones,R.W., Kapikian,A.Z. and Chanock,R.M.
Title : Comparative sequence analysis of the genomic segment 6 of four rotaviruses each with a different subgroup specificity
Journal : J. Gen. Virol. 69 (Pt 7), 1659-1669 (1988) PUBMED 2455770
Comment : X

Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University,Hsinchu, Taiwan
Contact with: bryan@mail.NCTU.edu.tw