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Predicted HCV wildtype target of known human miRNA      Release 1.0: 2005
Run by miRanda, click to link to other liver virus : HAVHBV HCV HDVHEVHGV
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Browse relationship between conservation and target sites of subtypes.
mfe <=     score >=  
Rank by  score    mfe
  


Here just show
mfe<=-10
The miRNA expression : 5(low) - 12(high).

Total 4725 rescords (95 pages)previous   Page 1   next   
rankmiRNAtarget starttarget endmfescorehybridizatoinmiRNA expression
in liver
TargetScan
1hsa-let-7c64106432-14.1121
uUGGUAUGU-UGGAUGAUGGAGu
|::||:|| ||: :||:|| |
cATTATGCACACTCGCTGCCACt
11.774NO
2hsa-let-7c70157035-13.4121
UUG-GUAUGUUGGAUGA-UGGAGu
|:| |||| |: :|| |||||
AGCTCATAGAG---GCTAACCTCc
11.774NO
3hsa-let-7d21562178-11.72121
ugauACGU--UGGAUGAUGGaga
|||| ::| ||||||
caggTGCATGGTCGACTACCcgt
7.888NO
4hsa-let-7d943971-10.92121
UGAUACGUUGGAU--------GAUGGAGa
|| |||: ||| | ||| |||
ACCATGTCACCAATGATTGCCCTAACTCg
7.888NO
5hsa-let-7e897921-13.92121
UGAUAU-GUUGGA---GGAUGGagu
|||:|: | :|:| ||||||
ACTGTGCCCGCTTCAGCCTACCaag
6.037NO
6hsa-let-7f21572178-12.9121
UUGAUAUGUUAGAUGAUGGagu
|: |: |:::|| ||||||
AGGTGCATGGTCGACTACCcgt
10.092NO
7hsa-let-7f59745995-20.5121
UUGAUAUGUUAGAUGAUGGagu
| ||: ||||||:||:||
ACCTGGTCAATCTGCTGCCcgc
10.092NO
8hsa-let-7g39653986-13.5121
ugACA--UGUUUGAUGAUGGAGu
||| ||::|| ||| ||||
ggTGTTCACGGACAACT-CCTCt
9.988NO
9hsa-let-7g84648493-12.51121
uGACA----UGU-----UUGAUGAUGGAGU
|||| ||| | :|:|||| |||
gCTGTGGTAACACCCTCACTTGCTACATCA
9.988NO
10hsa-miR-10082858310-10.5121
GUG-UUCAAGC-CUAG--AUGCCcaa
||| :|| || ||| |||||
CACTGAGAGCGACATCCGTACGGagg
9.137NO
11hsa-miR-10081888204-12.6121
GUGUUCAAGCCUAGAUGCCCAA
||| | ||| | :||||||
CACCA----GGA-CAGCGGGTT
9.137NO
12hsa-miR-106a76577681-10.86121
cgaUGGACGUG-ACAUUCGUGAaaa
| |||| | | | |||||
aaaAACTGCCCATCAACGCACTgag
8.618NO
13hsa-miR-106b17891809-12.12121
uagacgUGACAGUCGUGAaau
|||| ::|||||
gcccctACTGCTGGCACTacc
5.784NO
14hsa-miR-10768416868-16.2121
acuAUCGGGACA--UGU---UACGAcga
||||| ||| ||: |||||
acgTAGCCGTGTTGACGTCCATGCTcac
9.255NO
15hsa-miR-10a75267552-16121
guguuUAAGCCUAGA-----UGUCCCAu
|| ||||||| || ||||
tggggATCCGGATCTCAGCGAC-GGGTc
7.071NO
16hsa-miR-10b13781403-10.6121
UGUUUAAG---CCAAGA-UGUCCCau
||| : || ||| || || |||
ACATGATCGCTGGTGCTCACTGGGga
6.727NO
17hsa-miR-10b16421663-13.7121
UGUUUAAGCCAAGAUGUCCCau
||| | | |: :|||||
ACACCGGCTGGTTAGCAGGGct
6.727NO
18hsa-miR-10b48374857-14.3121
UGUUUAAGCCAAGAUGUCCCau
|||:|||:| | || |||
ACAGATTTGTGGC-ACCGGGgg
6.727NO
19hsa-miR-10b16751696-13.3121
UGUUUAAGCCAAGAUGUCCCAu
|||||||| ||| |||| |
ACAAATTCAACTCTTCAGGCTg
6.727NO
20hsa-miR-10b40734094-12.8121
uguuuaaGCCAAGAUGUCCCAu
| | ||||| |||
cgcagccCAGGGCTACAAGGTg
6.727NO
21hsa-miR-124a64076433-16.76121
aCCGUAA---GUG-GCGC-ACGGaauu
|||||| ||| | || ||||
cGGCATTATGCACACTCGCTGCCactg
5.000NO
22hsa-miR-124a27292756-11121
accGUAAGUGG-----CGC-ACGGAAUu
| | | || ||| ||||| |
cctCCTGCTCCTGCTGGCGTTGCCTCAg
5.000NO
23hsa-miR-125a60906119-11.5121
gUGUCCAAUU-UC-----C-CAGAGUCCCu
|| || ||| || | || |:|||
aACCGGCTAATAGCCTTCGCCTCCCGGGGg
10.086NO
24hsa-miR-125b93299348-11.6121
aGUGUUCAAUCCCAGA-GUCCCu
| | | | | || |||||
aCTCCTGCTCG---CTGCAGGGg
10.846NO
25hsa-miR-125b71557181-14121
aGUGUUCAA---UCC--CAGAGUCCCU
|| || || || |||||:| ||
gCAGAAATTCTGCGGAAGTCTCGGAGA
10.846NO
26hsa-miR-12737033724-13.7121
ucGGUUCGAGUCUGCCUAGGcu
|| || | :||| |||
caCCCTGCACCTGCGGCTCCtc
5.000NO
27hsa-miR-12711721192-14.2121
ucgguUCGAGUCUGCCUAGGCu
| || | |||:||:|
gggggACCTGTG-CGGGTCTGt
5.000NO
28hsa-miR-12747634786-16.1121
UCGGUUCGAGUCUG-CCUA-GGCu
| ||| |||| | |||| |:|
AACCACGCTCCCCCAGGATGCTGt
5.000NO
29hsa-miR-12764556484-14.3121
uCGGUUCGAG-UCUG-----CCUAG--GCu
|:||| | :||| ||||| ||
tGTCAAAAACGGGACGATGAGGATCGTCGg
5.000NO
30hsa-miR-12771657186-14.2121
uCG-GUUC-GAGUCUGCCUAGGCu
|| ||| |||:|| |||:||
tGCGGAAGTCTCGGA--GATTCGc
5.000NO
31hsa-miR-12964806503-17.2121
CGUUCGGG--UCUGG-CGUUUUUc
|: :|:|| :|||| |||::||
GTCGGTCCTAGGACCTGCAGGAAc
5.000NO
32hsa-miR-13262676292-14.42121
gCUGGUACC-----GACAUCUGACaau
|:|:| || ||| :|||||
tGGCTAAGGGACATCTG-GGACTGgat
5.000NO
33hsa-miR-133a58575881-17.36121
uGUCGAC-CAACUU--CCCCUgguu
|:|| | ||||:| |||||
tCGGCAGCGTTGGACTGGGGAaggt
5.000NO
34hsa-miR-133a174195-10.4121
ugucGACCAACUUCCCCUGGuu
| || || ||| ||
ttgcCAGGACGACCGGGTCCtt
5.000NO
35hsa-miR-133a17391755-11.1121
uGUCGACCAACUUCCCCUGGuu
||| || | |||| ||
cCAG--GGCT---GGGGTCCta
5.000NO
36hsa-miR-133a48374862-15.9121
UGUC-GACCAACUU---CCCCUGGuu
|||| :| || | | ||||| |
ACAGATTTGTGGCACCGGGGGAGCgc
5.000NO
37hsa-miR-133b90909116-15.2121
AUCG-ACCAACUUC-----CCCUGGuu
| || | |||:|| ||| ||
TTGCGAGCTTGGAGACACCGGGCCCgg
NONO
38hsa-miR-133b323-17.1121
aUCGACCAACUUCCCCUGGUu
||| ||| ||||:| |
cAGCCCCCTGATGGGGGCGAc
NONO
39hsa-miR-133b87288747-13121
auCGACCAACUUC-CCCUGGUu
||||| ||| ||| |:|
gcGCTGG--AAAGAGGGTCTAc
NONO
40hsa-miR-13412161233-12.7121
GGGAGACCAGUUGGUCAGUGu
||:||| || |||| |:|
CCTTCT-CTC--CCAGGCGCc
5.000NO
41hsa-miR-13415741605-18.5121
GGGAGACCAGUUG--------GUCA---GUGU
|| ||| ||||| |||| ||||
CCAACTGATCAACACCAACGGCAGTTGGCACA
5.000NO
42hsa-miR-13416601677-13.5121
ggGAGACCAGUUGGUCAGUGU
|||| || |:||| ||||
ggCTCT--TCTATCAG-CACA
5.000NO
43hsa-miR-135a77377760-11121
aguGUAUCCUUAUU-UUUCGGUau
|| ||| | || ||||:||
tgcCAAAGGCAGAAGAAAGTCAca
NONO
44hsa-miR-13844404455-10.4121
cuaAGUGUUGUGGUCga
|| || ||||:|
ctgTC-CACCACCGGag
5.000NO
45hsa-miR-13831013116-11.2121
CUAAGUGUUGUGGUCGa
||| ::| :|:|:|||
GATCTGC-GCGCTAGCg
5.000NO
46hsa-miR-142-3p61226144-12.21121
agguauuucauccUUUGUGAUGu
| :||||||
ccatgtttcccccACGCACTACg
9.468NO
47hsa-miR-14333123335-14.5121
acuCG-AUGUCAC-GAAGUAGagu
|| |:|:||| | |||||
gccGCGTGCGGTGACATCATCaac
10.136NO
48hsa-miR-14558295850-15.6121
uuCCCUAAG-GACCCUUUUGACCug
||| | |||| |:||||
gtGGG---CGCTGGCTTAGCTGGcg
11.062NO
49hsa-miR-146a794816-13.9121
uuGGGUACCUUAAG-UCAAGAgu
| ||||| :| | :|||||
ggCGCATGGCGTCCGGGTTCTgg
NONO
50hsa-miR-14790079030-17.5121
cGUCUUCGUAA-----AGGUGUgug
||| ||||| ||||||
tCAG-CGCATTTTCACTCCACAgtt
5.000NO
let-7c
Target on hcv wildtype 
Binding site 6410-6432
mfe : -14.1
Hybrid sequence
uUGGUAUGU-UGGAUGAUGGAGu
cATTATGCACACTCGCTGCCACt let-7c
Target on hcv wildtype 
Binding site 7015-7035
mfe : -13.4
Hybrid sequence
UUG-GUAUGUUGGAUGA-UGGAGu
AGCTCATAGAG---GCTAACCTCc let-7d
Target on hcv wildtype 
Binding site 2156-2178
mfe : -11.72
Hybrid sequence
ugauACGU--UGGAUGAUGGaga
caggTGCATGGTCGACTACCcgt let-7d
Target on hcv wildtype 
Binding site 943-971
mfe : -10.92
Hybrid sequence
UGAUACGUUGGAU--------GAUGGAGa
ACCATGTCACCAATGATTGCCCTAACTCg let-7e
Target on hcv wildtype 
Binding site 897-921
mfe : -13.92
Hybrid sequence
UGAUAU-GUUGGA---GGAUGGagu
ACTGTGCCCGCTTCAGCCTACCaag let-7f
Target on hcv wildtype 
Binding site 2157-2178
mfe : -12.9
Hybrid sequence
UUGAUAUGUUAGAUGAUGGagu
AGGTGCATGGTCGACTACCcgt let-7f
Target on hcv wildtype 
Binding site 5974-5995
mfe : -20.5
Hybrid sequence
UUGAUAUGUUAGAUGAUGGagu
ACCTGGTCAATCTGCTGCCcgc let-7g
Target on hcv wildtype 
Binding site 3965-3986
mfe : -13.5
Hybrid sequence
ugACA--UGUUUGAUGAUGGAGu
ggTGTTCACGGACAACT-CCTCt let-7g
Target on hcv wildtype 
Binding site 8464-8493
mfe : -12.51
Hybrid sequence
uGACA----UGU-----UUGAUGAUGGAGU
gCTGTGGTAACACCCTCACTTGCTACATCA miR-100
Target on hcv wildtype 
Binding site 8285-8310
mfe : -10.5
Hybrid sequence
GUG-UUCAAGC-CUAG--AUGCCcaa
CACTGAGAGCGACATCCGTACGGagg miR-100
Target on hcv wildtype 
Binding site 8188-8204
mfe : -12.6
Hybrid sequence
GUGUUCAAGCCUAGAUGCCCAA
CACCA----GGA-CAGCGGGTT miR-106a
Target on hcv wildtype 
Binding site 7657-7681
mfe : -10.86
Hybrid sequence
cgaUGGACGUG-ACAUUCGUGAaaa
aaaAACTGCCCATCAACGCACTgag miR-106b
Target on hcv wildtype 
Binding site 1789-1809
mfe : -12.12
Hybrid sequence
uagacgUGACAGUCGUGAaau
gcccctACTGCTGGCACTacc miR-107
Target on hcv wildtype 
Binding site 6841-6868
mfe : -16.2
Hybrid sequence
acuAUCGGGACA--UGU---UACGAcga
acgTAGCCGTGTTGACGTCCATGCTcac miR-10a
Target on hcv wildtype 
Binding site 7526-7552
mfe : -16
Hybrid sequence
guguuUAAGCCUAGA-----UGUCCCAu
tggggATCCGGATCTCAGCGAC-GGGTc miR-10b
Target on hcv wildtype 
Binding site 1378-1403
mfe : -10.6
Hybrid sequence
UGUUUAAG---CCAAGA-UGUCCCau
ACATGATCGCTGGTGCTCACTGGGga miR-10b
Target on hcv wildtype 
Binding site 1642-1663
mfe : -13.7
Hybrid sequence
UGUUUAAGCCAAGAUGUCCCau
ACACCGGCTGGTTAGCAGGGct miR-10b
Target on hcv wildtype 
Binding site 4837-4857
mfe : -14.3
Hybrid sequence
UGUUUAAGCCAAGAUGUCCCau
ACAGATTTGTGGC-ACCGGGgg miR-10b
Target on hcv wildtype 
Binding site 1675-1696
mfe : -13.3
Hybrid sequence
UGUUUAAGCCAAGAUGUCCCAu
ACAAATTCAACTCTTCAGGCTg miR-10b
Target on hcv wildtype 
Binding site 4073-4094
mfe : -12.8
Hybrid sequence
uguuuaaGCCAAGAUGUCCCAu
cgcagccCAGGGCTACAAGGTg miR-124a
Target on hcv wildtype 
Binding site 6407-6433
mfe : -16.76
Hybrid sequence
aCCGUAA---GUG-GCGC-ACGGaauu
cGGCATTATGCACACTCGCTGCCactg miR-124a
Target on hcv wildtype 
Binding site 2729-2756
mfe : -11
Hybrid sequence
accGUAAGUGG-----CGC-ACGGAAUu
cctCCTGCTCCTGCTGGCGTTGCCTCAg miR-125a
Target on hcv wildtype 
Binding site 6090-6119
mfe : -11.5
Hybrid sequence
gUGUCCAAUU-UC-----C-CAGAGUCCCu
aACCGGCTAATAGCCTTCGCCTCCCGGGGg miR-125b
Target on hcv wildtype 
Binding site 9329-9348
mfe : -11.6
Hybrid sequence
aGUGUUCAAUCCCAGA-GUCCCu
aCTCCTGCTCG---CTGCAGGGg miR-125b
Target on hcv wildtype 
Binding site 7155-7181
mfe : -14
Hybrid sequence
aGUGUUCAA---UCC--CAGAGUCCCU
gCAGAAATTCTGCGGAAGTCTCGGAGA miR-127
Target on hcv wildtype 
Binding site 3703-3724
mfe : -13.7
Hybrid sequence
ucGGUUCGAGUCUGCCUAGGcu
caCCCTGCACCTGCGGCTCCtc miR-127
Target on hcv wildtype 
Binding site 1172-1192
mfe : -14.2
Hybrid sequence
ucgguUCGAGUCUGCCUAGGCu
gggggACCTGTG-CGGGTCTGt miR-127
Target on hcv wildtype 
Binding site 4763-4786
mfe : -16.1
Hybrid sequence
UCGGUUCGAGUCUG-CCUA-GGCu
AACCACGCTCCCCCAGGATGCTGt miR-127
Target on hcv wildtype 
Binding site 6455-6484
mfe : -14.3
Hybrid sequence
uCGGUUCGAG-UCUG-----CCUAG--GCu
tGTCAAAAACGGGACGATGAGGATCGTCGg miR-127
Target on hcv wildtype 
Binding site 7165-7186
mfe : -14.2
Hybrid sequence
uCG-GUUC-GAGUCUGCCUAGGCu
tGCGGAAGTCTCGGA--GATTCGc miR-129
Target on hcv wildtype 
Binding site 6480-6503
mfe : -17.2
Hybrid sequence
CGUUCGGG--UCUGG-CGUUUUUc
GTCGGTCCTAGGACCTGCAGGAAc miR-132
Target on hcv wildtype 
Binding site 6267-6292
mfe : -14.42
Hybrid sequence
gCUGGUACC-----GACAUCUGACaau
tGGCTAAGGGACATCTG-GGACTGgat miR-133a
Target on hcv wildtype 
Binding site 5857-5881
mfe : -17.36
Hybrid sequence
uGUCGAC-CAACUU--CCCCUgguu
tCGGCAGCGTTGGACTGGGGAaggt miR-133a
Target on hcv wildtype 
Binding site 174-195
mfe : -10.4
Hybrid sequence
ugucGACCAACUUCCCCUGGuu
ttgcCAGGACGACCGGGTCCtt miR-133a
Target on hcv wildtype 
Binding site 1739-1755
mfe : -11.1
Hybrid sequence
uGUCGACCAACUUCCCCUGGuu
cCAG--GGCT---GGGGTCCta miR-133a
Target on hcv wildtype 
Binding site 4837-4862
mfe : -15.9
Hybrid sequence
UGUC-GACCAACUU---CCCCUGGuu
ACAGATTTGTGGCACCGGGGGAGCgc miR-133b
Target on hcv wildtype 
Binding site 9090-9116
mfe : -15.2
Hybrid sequence
AUCG-ACCAACUUC-----CCCUGGuu
TTGCGAGCTTGGAGACACCGGGCCCgg miR-133b
Target on hcv wildtype 
Binding site 3-23
mfe : -17.1
Hybrid sequence
aUCGACCAACUUCCCCUGGUu
cAGCCCCCTGATGGGGGCGAc miR-133b
Target on hcv wildtype 
Binding site 8728-8747
mfe : -13
Hybrid sequence
auCGACCAACUUC-CCCUGGUu
gcGCTGG--AAAGAGGGTCTAc miR-134
Target on hcv wildtype 
Binding site 1216-1233
mfe : -12.7
Hybrid sequence
GGGAGACCAGUUGGUCAGUGu
CCTTCT-CTC--CCAGGCGCc miR-134
Target on hcv wildtype 
Binding site 1574-1605
mfe : -18.5
Hybrid sequence
GGGAGACCAGUUG--------GUCA---GUGU
CCAACTGATCAACACCAACGGCAGTTGGCACA miR-134
Target on hcv wildtype 
Binding site 1660-1677
mfe : -13.5
Hybrid sequence
ggGAGACCAGUUGGUCAGUGU
ggCTCT--TCTATCAG-CACA miR-135a
Target on hcv wildtype 
Binding site 7737-7760
mfe : -11
Hybrid sequence
aguGUAUCCUUAUU-UUUCGGUau
tgcCAAAGGCAGAAGAAAGTCAca miR-138
Target on hcv wildtype 
Binding site 4440-4455
mfe : -10.4
Hybrid sequence
cuaAGUGUUGUGGUCga
ctgTC-CACCACCGGag miR-138
Target on hcv wildtype 
Binding site 3101-3116
mfe : -11.2
Hybrid sequence
CUAAGUGUUGUGGUCGa
GATCTGC-GCGCTAGCg miR-142-3p
Target on hcv wildtype 
Binding site 6122-6144
mfe : -12.21
Hybrid sequence
agguauuucauccUUUGUGAUGu
ccatgtttcccccACGCACTACg miR-143
Target on hcv wildtype 
Binding site 3312-3335
mfe : -14.5
Hybrid sequence
acuCG-AUGUCAC-GAAGUAGagu
gccGCGTGCGGTGACATCATCaac miR-145
Target on hcv wildtype 
Binding site 5829-5850
mfe : -15.6
Hybrid sequence
uuCCCUAAG-GACCCUUUUGACCug
gtGGG---CGCTGGCTTAGCTGGcg miR-146a
Target on hcv wildtype 
Binding site 794-816
mfe : -13.9
Hybrid sequence
uuGGGUACCUUAAG-UCAAGAgu
ggCGCATGGCGTCCGGGTTCTgg miR-147
Target on hcv wildtype 
Binding site 9007-9030
mfe : -17.5
Hybrid sequence
cGUCUUCGUAA-----AGGUGUgug
tCAG-CGCATTTTCACTCCACAgtt