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Known Host miRNA Targets on Virus

   There are several viruses regulated by host miRNAs after infecting mammalian cell. The published miRNA targets are shown below. Click to browse the situation of miRNA: miRNA target which is also detected by ViTa.


   Human mir-122a v.s HCV (Catherine L. Jopling et al., 2005)

   Human mir-32 v.s PFV-1 (Charles-Henri Lecellier et al., 2005)

   Hsa-mir-29a, Hsa-mir-29b, Hsa-mir-149, Hsa-mir-324-5p, Hsa-mir-378 v.s HIV-1 (Manoj Hariharan et al., 2005)    not experimented!







Human microRNAs v.s HIV-1

microRNAsaccessionmirna loctiontarget locationscoremfehybridizationnotemiRandaTargetScan
hsa-miR-29aK020132-228796-8817175.00-22.10
uUGGCU-AAAGUCUACCACGAU
||:|| ||::||||||||||
cACTGACCTTTGGATGGTGCTA
not experimentYesYes
hsa-miR-29bK020133-248794-8817179.00-23.00
uuGUGACU-AAAGUUUACCACGAU
|||||| ||:::|||||||||
tcCACTGACCTTTGGATGGTGCTA
not experimentYesYes
hsa-miR-149K020131-225400-5422194.00-26.60
CCUCAC-UUCUGUGCCUCGGUCu
|||| | |||| |:||||||||
GGAGAGCAAGAAATGGAGCCAGt
not experimentYesYes
hsa-miR-324-5pK020131-234787-4808191.00-24.50
UGUGGUUACGG-GAUCCCCUACGc
|||| || || |||||||||||
ACAC--ATCCCACTAGGGGATGCt
not experimentYesYes
hsa-miR-378K020133-228215-8235177.00-25.30
ugUGUCCUGGACCUCAGUCCUc
|||| | :|||||||||||
ctACAGTA-TTGGAGTCAGGAa
not experimentYesYes
hsa-miR-378K034543-228158-8178177.00-25.30
ugUGUCCUGGACCUCAGUCCUc
|||| | :|||||||||||
ctACAGTA-TTGGAGTCAGGAa
not experimentYesYes

Department of Biological Science and Technology, Institute of Bioinformatics
National Chiao Tung University,Hsinchu, Taiwan
Contact with: bryan@mail.NCTU.edu.tw